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Hi Michael,
Sorry to bother you again! I seem to have it another issue...
When I was using phyDS earlier this month, I was only searching for the sister hit of two 'species' (they're actually …
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Hello,
I'm hoping to run the HybPiper pipeline on my institution's cluster. After testing that all dependencies were available and reads_first.py was running normally on a sand-box partition of the…
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Orthogroups_UnassignedGenes.tsv file contains all of the genes that were not assigned to any orthogroup. But then why they are given an orthogroup ID. Can we say these gene list specific to that part…
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What is the process for assigning shorter names to genes?
These are very long :-)
```
Streptomyces_rishiriensis_parY_mutant_conferring_resistance_to_aminocoumarin 76
Chlamydia_trachomatis_intrin…
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Hi Michael,
Thanks so much for making this super useful tool! I'm trying to use it to find the sister ortholog of a set of genes in a tree, but I keep hitting a wall. I'm using a shared HPC system…
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### 路由地址
/oup/journals
### 完整路由地址
/oup/journals/:name
### 相关文档
https://docs.rsshub.app/journal.html#oxford-university-press
### 预期是什么？
can work
### 实际发生了什么？
I input `/oup/jo…
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Hi! This is more of a question than an issue per se
I'd like to look at the statistics of within-orthogroup similarity. Most simply, this could just be extracted from the DIAMOND output (right?). …
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Greetings,
I'd like to use this piece of software on a custom HMM profile (pVOGs for viruses). I tried to simply copy the .hmm profile into the hmm_sets directory, but the program doesn't recognize a…
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Hello,
With @hattrill @ValWood and @RLovering we have produced a new generic subset for MF
It has much fewer binding terms (6, while the current has 16)
Terms in the new generic subset:
…
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Hello there,
I'm using Panaroo version 1.2.2 to create pangenomes of ~25 thousand species. Installed panaroo via conda in a new environment. During my analysis I came across pangenome reference seq…