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---
id: tellurium
version: 2.2.8
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_tellurium/f50ee4fa861652a681ce77c2f46126b6c9db1e16/biosimulators.json
specificationsPa…
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### Simulation tool
---
id: tellurium
version: 2.2.8
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_tellurium/139ab61be949ca54f52103293771d083ad8020bc/biosimula…
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When computing the gradient with respect to initial conditions, I find that the adjoint and fwd gradient computations differ slightly. Following equation 14 of [CVODES manual](https://computing.llnl.…
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Hello everyone,
I'm trying to get a custom `rrule` working in MTK using `ChainRules`.
Without using ModelingToolkit, this works:
```julia
using DifferentialEquations, ChainRules, ChainRulesC…
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# Take awhile to precompile with style all of the DiffEq stack, no denial
Our goal is to get the entire DiffEq stack compile times down. From now on we should treat compile time issues and compile …
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E.g.
* write to file
* call shell process
* communicate through pipe/socket?
My main motivation is to allow e.g. executing Python code from inside the document.
Unfortunately this would slo…
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As I wrote [in this issue](https://github.com/FluxML/Zygote.jl/issues/1325), recently differentiating MTK models stopped working for me.
A MWE:
```julia
using DifferentialEquations, ModelingToo…
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I am relatively new to Julia, so please excuse potentially basic questions. I tried running the Lotka Volterra scripts using Julia 1.8. Once I run the line "Optimization.solve(...)" I get a very long …
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Hi I would like to send a PR to blackjax with this [example from numpyro](https://num.pyro.ai/en/stable/examples/ode.html) without using numpyro's `initialize_model` model function. However, it seems …
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---
id: smoldyn
version: "2.70"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/524265040b62a10e810ae958aa3066e3a661f66c/biosimulators.json
specificationsPatch:
version: "2.70…