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in WP 2 of the proposal we speak of a word importer. Can we reuse the tool from Mahdi? Check with our HSR and MDA documents
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Have a function to be able to set an intelligent initial set of values for looping parameters (output parameters used by internal models).
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Now that we have Bonghyun's code that will compute the area under the curve, we need to actually use it to evaluate the methods, correct? That is, we need to run the code with the ETAS model (from the…
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### Expected behaviour
when I have a dcd/xtc that is part of a long simulation the first frame in the file should have a different time than 0.
### Actual behaviour
the memory reader always a…
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## Additional Information
- This issue is originally found in [Issue 3925](https://github.com/MDAnalysis/mdanalysis/issues/3925#issuecomment-1868292405). Please have a look in that conversation.
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Note: not as a new gem inheriting from generic, but as a pure skin of generic—bundling generic with stylesheets and config. If we can't do that, and require gems for each new deployment of an SDO, we …
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Hey,
I really want to use your tool, because it looks so convenient (and open source which I love). While installing I was only able to get pycontact to work with mdanalysis 0.20.1, because everytime…
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I'm pretty new to using `AnalysisBase` to write my own custom analysis classes, and I found it confusing that `frames` and `times` are handled differently in different classes.
Using the `NewAnalys…
edisj updated
4 months ago
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Here's some channel data from squac, how does UW.BCAT exist in squac? I can't tell if the station went through a network name change, but that seems unlikely since IRIS doesn't have any record of UW.…
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## Is your feature request related to a problem? ##
I don't think cmaps is properly considered as TopologyObjects.
```
u1 = mda.Universe('xxx.pdb')
u2 = mda.Universe('xxx.pdb')
u1.add_Topolog…