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I have a sequence containing only one gene and not much extra bases on either side of the start/stop codons. When I'm trying to design primers that overhang on either side with more bases than the len…
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#### Steps to reproduce
1. Setup a page on a test website that opens the Pickr homepage on an iframe. (I'm using a route on a Ruby on Rails site.)
2. Open the page on a mobile device browser.
3. …
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First, make sure that none of the open and closed issues is about the same issue as you are describing, and make sure to check the frequently asked questions in the README file.
Then, replace the par…
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# SEP 004 -- Add contextual role properties to SequenceAnnotation and Component
| SEP | 004 |
| --- | --- |
| **Title** | Add contextual role properties to SequenceAnnotation and Component |
| **Auth…
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I have a usage case were we have a PCR based assay for detecting a deletion with sequencing taking place on a MinION some of our sequenced products are less than 500bp this is down to the design of ou…
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Hi there,
The preprint for Distanced - https://www.biorxiv.org/content/biorxiv/early/2018/09/24/423186.full.pdf - has just been released.
Big take-home message on their benchmarking is that DADA…
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Tested v1.4 and it seems that DupRadar is broken:
```
~/D/t/80791ee1db8a958074d47827688b86> ls -l
total 1508544
-rw-r--r-- 1 alex users 788007786 Apr 9 16:00 AS-225023-LR-34148Aligned.sortedByC…
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ECO now contains many evidence terms for "microarray evidence". On quick inspection, I can see:
- ECO:0005524 - DNA microarray evidence (a molecule detection assay evidence)
- ECO:0000104 - microarr…
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I have a TSV file training_abstracts.tsv when I use the function:
‘def test1():
with open('F:\\small paper\\ner\\data_file\\training_abstracts.tsv', 'r', encoding='utf-8') as f1:
line =…
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Note: all of the species tests have (I think) an implicit bug where they will fail to do the right thing when viewing results for the Hawaiian strain (c_elegans_PRJNA275000), assuming there are ob…