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Hi Thang,
Here #7 you have proposed a way to calculate the number of peptides used for quantification to filter the final MaxLFQ table.
I was wondering, how is this different from the option `p…
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hi~
running deepimmuno-cnn on mode "multiple" returns this error:
```
UnboundLocalError: local variable 'encode' referenced before assignment
```
which can be traced back to line 156 of `de…
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Great idea and good tool. Thank you.
Can you specify the Fragpipe settings in the descriptions? Specifically, it seems that decoy is needed for for calculation, is it correct? I don’t think Fragpip…
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Hello.
Thanks for this awesome work.
This is related to #72 and #98
I am trying to understand if I can use transformato for a protein-peptide system where there are point mutations in the peptide(…
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Dear all,
I want to test enspara for backbone clustering of protein trajectories. However, when i ran through the tutorial, i came across this error:
```
(enspara) psc@psc-linux:~/enspara$ ensp…
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Hi,
This non-standard structure has a broken secondary structure when loaded on PyMol.
Molstar is able to generate a secondary structure like this one
. While things like PCA explain a lot of the variance, the peptides all form a big blob no ma…
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Currently, each letter is a distinct SVG element, which makes highlighting go insane. Would like to be able to copy peptides (and substrings of peptides).
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Hi @ammarcsj ,
I am back with an additional question :)
Is there a way to specify the minimum number of peptides a protein should have to get a LFQ value?
Neither in the GUI nor in the code I don…
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## Package workflow at the moment is:
- ### Unchanged functions
```
##Use example peptide data set, read in and clean data
inputFile %
# spread(Fraction, `Precursor Area`) -> forClustering…