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I've been trying to set up Openfold to test it out this week. It's been somewhat of a struggle but I am sooo close right now.
Everything is installed and no errors along the way.
But now this, .…
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### Setup
I am reporting a problem with Biopython version 1.76, Python version 3.6.9, and operating
system Linux-5.4.0-67-generic-x86_64-with-debian-buster-sid. Code is as follows,
```python
i…
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Hi there,
I started downloading all data into my designated folder with sufficient room. While I am able to download params, bfd, mgnify, pdb70, and uniclust30, I got error message for downloading …
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Hi, I can't run alphafold deamon after installation (see below).
$ python3 run_alphafold.py --fasta_paths=T1050.fasta --max_template_date=2020-05-14
/opt/conda3/envs/af2/lib/python3.8/site-packages/…
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I was thinking of ways to help generic parsing of custom properties (e.g. imagine being able to visualize whatever anyone adds as custom atom or residue properties in an MMTF file in PyMOL ;-)). This …
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hi @radames
thanks for creating this project, which converts python blender pipelines to stand-alone web apps.
I want to share an idea for a follow-up project:
@bradyajohnston just created the …
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I want to add only chain ID to my PDB but couldn't manage to add chain ID without adding segment ID. Is there anyway to add only chain?
My script looks like following
```
import MDAnalysis as mda
…
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Hi, I noticed this strange behavior zooming in on big structures like 3UNE or 1AON.
![screenshot from 2018-04-09 17-45-39](https://user-images.githubusercontent.com/20627977/38508883-a3ab1172-3c20-11…
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When unpacking an `mmtf` file, this implementation expects doubles for the transformation matrices.
The specification outlines the [float type as 32bit](https://github.com/rcsb/mmtf/blob/v1.0/spec.md…
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### Description
I am attempting a prediction of the enolase dimer with its ligand 2PG by running these commands:
```
$ mkdir data
$ wget -O "data/2PG.sdf" "https://files.rcsb.org/ligands/downl…