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We currently use an algorithm to allow for a user to provide a sequence and then query the API for parts, cache the query, find all forward/reverse part sequences in the query sequence, and then use a…
vsoch updated
4 years ago
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I do not entirely understand what is happening, but in some cases CDSs with ribosomal slippage from NCBI cause `double free or corruption (!prev)`:
```
$ gffread --version
0.12.7
$ curl https://…
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Towards the end of dynamic time steps, it will be necessary to detect when simulation steps have failed (e.g. does not meet some minimal accuracy criterion), and if so, revert the state of the system …
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Please provide as much information as you can:
* **GO term ID and Label**
GO:0030685 nucleolar preribosome
* **Reason for deprecation** Put an x in the appropriate box:
- [ ] The reas…
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- [ ] ned1 as per PMID:26774782
The second
annotated 150bp-long intron is retained, resulting in insertion of additional 50
amino acids in a region between the N-lipin and HAD-like domains
old
…
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I recently started using riboviz to analyze some published ribosome profiling data. It worked very well, thank you very much for all of your work! Running the program on the University of Chicago clus…
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Hi Cyril,
Thanks for your work - codonDT has the potential to be quite useful for our work.
I have matched riboseq and rnaseq data. I've run a test sample with only the riboseq to completion. …
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From the 2017-03-14 annotation call:
http://wiki.geneontology.org/index.php/Annotation_Conf._Call_2017-03-14#Minutes
It would be helpful for curators from the contributing groups to have a list of…
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- (mostly . . . allow exons to overlap), just for specific isoforms
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as @cmdcolin noted, we have a bunch of code for frameshifts and they are in the code, but we do not appear to act…
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Hackathon idea, as discussed in the UGM talks:
- move the mmCIF parser from the e-PDB folks into the core RDKit codebase.
See also #1584