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BeTR uses `waterflux_vars%qflx_rootsoi_col` and has units [m H2O/s], while all other
fluxes are in the units of [mm H2O/s]. Need to make units of `waterflux_vars%qflx_rootsoi_col`
consistent.
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Hi, I experienced that modifying the objective in the cplex interface scales badly.
For a model with about variables setting the objective takes about half of the time when optimizing (see "cumtime…
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The reaction path flux calculation appears to fail for reactions such as:
H + HO2 2 OH
For example, running the following code:
```py
import cantera as ct
g = ct.Solution('h2o2.xml')
g.…
speth updated
7 years ago
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**Summary of Issue:**
CLM45 (BGC, SP and ED modes) inserts two time steps (hourly) ahead at the beginning of the output variables compared with input variables , e.g. FSDS , FLDS and others. If you…
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Reported by: naromero77
A number of tests are failing with mixed precision complex. Most of the test seem to be an energy exceeding three sigma.
This is occurring
hyperion build script, configure an…
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I've been looking at detectDeadEnds, and when setting removeExternalMets to 1, the behavior seems to be buggy.
All examples are from human RECON 2 website.
Right now, setting it to true would remove a…
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Hi all,
I just did a clean install from the git repository. The summary method test fails when running `test_all()`
with
tabulate (0.7.5)
pandas (0.18.1)
and I get the following error
```
FAIL: tes…
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# A simulated dataset
[_cross posted on our website_](http://terraref.ncsa.illinois.edu/articles/simulated_phenotypes/)
The intent is to begin to get feedback on some rough sketches of what some dat…
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I really like the library but am still missing one critical functionality, to be able to read the message one chunk (HTTP chunk on the wire) at a time. I would want to have a parser for which async_pa…
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As a general question for cobrapy users/developers, how do you actually analyze a model once its been solved? In general, the current API for answering questions like "what reactions are producing or …