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https://mp.weixin.qq.com/s/HKPj2itH7ALiQrPiqqL9Jw
ixxmu updated
2 years ago
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An older version of this repository (it appears the git history has been purged) hosted tabular versions of the DoRothEA database from 20180915. More specifically, I was relying on data persisting at …
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Hello pySCENIC,
I run the pySCENIC following the cancer dataset tutorial (http://htmlpreview.github.io/?https://github.com/aertslab/SCENICprotocol/blob/master/notebooks/SCENIC%20Protocol%20-%20Case…
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**Describe the bug**
I was following the pbmc tutorial to get the modules from the adjacencies file for input into iRegulon. However, the modules_from_adjacencies command kept crashing my computer.
…
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https://mp.weixin.qq.com/s/pN4qWdUszuGqr8nOJstn8w
ixxmu updated
2 years ago
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**Describe the bug**
A clear and concise description of what the bug is.
**Steps to reproduce the behavior**
1. Command run when the error occurred:
```python
from pyscenic.utils import modul…
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I get an error using mlm:
```
Error: Problem with `mutate()` column `model`.
ℹ `model = list(mlm_evaluate_model(.data$condition))`.
x Tibble columns must have compatible sizes.
* Size 159: Existi…
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https://mp.weixin.qq.com/s/SIfyGzx4fwXPtQsVvvwwMQ
ixxmu updated
2 years ago
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Looks like the `intersect_regulons` method was changed to `filter_regulons` instead, but README is not update. I think the correct example would be:
`network
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Many thanks for the nice work. I just finished reading the Van de Sande paper, and have performed a regulon analysis on our data.
One thing I would like to do is to assess which regulons are most …