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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mani2012/PathoStat
Confirm the following by editing eac…
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I want to consolidate loosely the topics:
- JuliaDiffEq/Sundials.jl#3
- JuliaDiffEq/Sundials.jl#10
- JuliaDiffEq/DifferentialEquations.jl#41
- JuliaDiffEq/DifferentialEquations.jl#36
- JuliaDiffEq/OD…
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Hi,
I would like to request your help in creating a phyloseq object for further analysis. This is the first time am getting to use phyloseq and am eager to see some plots and perform some analysis.
My…
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I have use cases for building matrices of TPM/counts where the `length(txId) != length(raw[[txIdCol]])`:
1. Combining data from human/mouse xenografts with measure of the same human or mouse genetic b…
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I've been going through the phyloseq tutorials, trying to implement the negative binomial variance stabilization by way of DESeq, (as in the 'Waste not, want not' paper) and I'm running into a bit of …
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Hi all,
I have a statistical question regarding the test I can do to see differences between treatment groups considering the nature of the sequencing data.Sorry for my ignorance, I don´t have much st…
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I wonder why multitest is used for phyloseq; since It seems the result is suject to the value of "B". What is the advantage of premutation. why not simply using a test (F-test, wilcoxon, ...) and cor…
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Hi Joey,
With my dataset, I'm most interested in whether my samples cluster together according to different factors (simulation A in your paper), rather than what are the specific OTU's that are diff…
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I may be jumping the gun on this one a little bit and these questions may be answerable once you release the vignettes and Rmarkdowns associated with your "Waste not, want not" paper. If so, I look fo…