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Good day,
I am not able to plot the footprint of a subset of cluster I have on my data. I get the footprints:
```
seFoot
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This is going to be the longest one (well, maybe #6).
## Create vignette skeleton
You can do that with `biocthis`, particularly with https://github.com/LieberInstitute/TREG/blob/main/dev/03_core…
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Hi
I am trying to avoid NCBI/UCSC reference genome incompatibility issues by keeping everything NCBI. To run AddMotifs, I am attempting to use a FaFile as the "genome" (I cannot find a BSgenome fo…
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**Date accepted:** 2022-06-10
Submitting Author Name: Edward Wallace
Submitting Author Github Handle: @ewallace
Other Package Authors Github handles: @DimmestP
Repository: https://github.com/ewall…
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Hi-
This issue may be unique to my data-set, but I'm noticing that when impute() encounters a string of NAs before a true value, it rightfully imputes the lowest global value in the data-set in all…
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Hi Andy. Beginning in some recent version plot.BchronologyRun stopped recognizing standard plot arguments xlab, ylab, main, and cex.
It also does not seem to be producing a plot object that is rec…
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Hi,
I'm trying to view the genotype plot, however I always get this error this error: Error: Insufficient values in manual scale. 13 needed but only 3 provided. If I run cluster = TRUE, then I can…
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## The problem
I'm having trouble with the augment.rqs function and the order in which the original data are stored in the augmented output. I don't have the time to create a PR with the solution a…
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Our plot function is becoming more and more bloated.
I have redesigned a new approach which embraces a pipe structure and more straight forward functional programming (similar to ggplot). While keepi…
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Hi I am trying to subset the archr obj by extracting cell from a few clusters and running into the below error. When i subset an archr object without motif matrix it subsets fine. But when it has a mo…