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Hello there,
First, thanks very much for coding this in python! I am currently testing it with the HCP dataset (1.25mm, 3 shells, 90 dirs in each).
To fit with more generic input output toolchains, w…
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Hi Jon @pipitone
I was wondering if you can take a look at the new code added to the GBSS:
GBSS/NODDI/native/gbss_native.sh
It seems that the while loop is not working for some reason the j and k…
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Hi,
I'm from NeuroPoly (University Polytechnique of Montreal).
I'm doing spinal cord microstructure parameters estimation.
I would like to use AMICO with ActiveAx. However my qspace is 2D, all diffu…
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Hi, I am a new user of AMICO for analysis of NODDI data that I am acquiring. As far as I can see, I have successfully installed all dependencies and the whole analysis pipeline runs smoothly in MATLAB…
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Hi,
I am trying to open a .mih file with the mrview command. It works fine but the file I want to open is converted from raw bruker data:
gast096e:~ medisip$ mrview /Users/medisip/NODDI_shell2.mih
…
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After upgrading numpy from 1.9.3 to 1.10, I got an error as follows:
```
In [8]: ae.fit()
-> Fitting "NODDI" model to 290353 voxels:
[ ] 0.0%---…
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Hello,
```
We have a question related to computing Kernels. In the documentation it is indicated that based on the data structure set up, kernels will be computed only once per each study to save tim…
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Do you know some references or a methodology to decide the values for w_{cgm,dgm,wm} and w_{f1, f2, f3} in the equations of the appendix?
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Congratulations on the fantastic toolbox. I am amazed by the speed of model fitting for NODDI and, considering that the results can be ready in a short time, I find myself staring at the monitor until…