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e.g. when we only have well C01, we still get this plate .zarrs:
```
{
"barcode": "example-barcode",
"order_name": [
"example-order"
],
"plate": {
"columns": …
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For some microscope modalities one collects 2D images, but it can make sense to still assign them a physical thickness along axis perpendicular to the 2D plane, e.g the axial extend of the PSF in ligh…
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I'm wondering if it's possible to tell Zarrita that I know the zarr is v3, instead of letting it figure this out itself?
I imagine that mostly it's a pretty insignificant cost to test for `.zattrs`…
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Currently, the backend only supports exploring NGFF version 0.4. It would be nice to support version 0.5. At least the current backend expiration code of the NgffExplorer reads like it only support th…
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Hi
Thanks for making this package available publicly. It is really powerful.
Is there any plan to support feature extraction for 3D images in the near future?
Cheers
Pradeep
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Conversion
- [x] 41744
- [x] 41744_illum_corrected
- [x] 41749
- [x] 41749_illum_corrected
- [x] 41754
- [x] 41754_illum_corrected
- [x] 41755
- [x] 41755_illum_corrected
- [x] 41756…
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Add support for Polygons, Polylines, Lines, Ellipses etc.
See https://napari.org/tutorials/fundamentals/shapes.html for ways of representing nD shapes.
Prompted by request for viewing Shapes in viza…
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As far as I can tell, when using the validator for a zarr that has numpy.dtype, e.g. uint16, the array size and chunk sizes do not appear to be correctly computed. See, e.g.:
https://deploy-preview-3…
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The definitions of the coordinate terms in SpatialOrientationEnums is as follows:
```
Coordinate orientation codes have a place-value organization such that an ImageDimension-al sequence of subcodes…
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In the [current efforts](https://github.com/cellcanvas/cellcanvas/tree/lazy-large) to get copick running in CellCanvas, two things are clear:
- segmentations should be children of a `VoxelSpacing[xx.…