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Hi there,
I'm working through performing the MEDS ETL pipeline for OMOP data from Stanford, getting a polars `InvalidOperationError` when running `meds_etl_omop --backend cpp ${OMOP_DIR} ${TARGET_D…
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For the EHDEN Data Management Plan, we need to describe the various protocols that we are using in the project. Is there a description of the Arachne Data Node API available somewhere that we can poin…
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@ilovemane I guess the above warning is unintentional?
``` r
omock::mockCdmReference() |>
omock::mockCohort()
#> Warning: There was 1 warning in `dplyr::filter()`.
#> ℹ In argument: `.data$ra…
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Looking NDC `00069551066-cetirizine hydrochloride 10 MG Oral Tablet [Zyrtec]` in the 20160311 VOCAB we have:
- VALID_START_DATE 2010-11-01
- VALID_END_DATE 2012-12-01
Looking in raw claims data, it l…
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https://github.com/darwin-eu/CDMConnector/blob/b7fda01d9d1c06d7d386bb0db6f50fe6941432db/R/cdm.R#L122C4-L122C38
Not everyone has write access to the same db that the CDM is contained within.
For …
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I have used R packages to build the OMOP CDM schema in bigquery but I am getting errors. The error was caused due to unnecessary NULL keywords.
e.g birth_datetime datetime null,
The error given by b…
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# Adding a source value column for IDs to the visit_occurence table
## CDM or THEMIS convention?
THEMIS
## Table or Field level?
Field
## Is this a general convention?
No
## Summary of issues
- v…
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Update vocabulary tables to include all SNOMED codes.
Issue:
====
Cannot map metadata items to 6 digit concept IDs, e.g.:
607590 | 1153637007 | [Body height](https://athena.ohdsi.org/search-te…
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Items to be completed in support of OHDSI Analytics and related tools in advance of the OHDSI Symposium
- Cover how feature extraction and other OHDSI tools would be used in this use case
## TODO
-…
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Items to be completed in support of Synthetic Data generation in advance of the OHDSI Symposium
- Consider using synthetic data with generated addresses in 3 locations (domestic & international)
…