-
FLybase and SGD have more complex multi-term phenotypes that require special consideration in the modeling.
We need to plan and implement ingests for these.
-
Hey Karl,
I used the GNapi to get a list of all published phenotypes before, but it seems that the API cannot do this anymore.
I can still get individual phenotypes using:
list_datasets("BXD", …
-
I was able to get the C++ version compiled, but now I am seeing large discrepancies with the results compared to the python version. The problem seems to be with the C++ version. For example, here is …
-
{"results":[]}
For example clicking on download all results for this query: http://kb.phenoscape.org/#/entity/http://purl.obolibrary.org/obo/UBERON_2001226?tab=taxa&taxatab=phenotypes&genestab=phen…
-
+ Gene ontology
+ Publications/References
+ Strains and Phenotypes
-
The Phenoscape KB allows querying for evolutionary phenotype profiles that share semantic similarity with the phenotypic profile of a query gene. These evolutionary phenotype profiles are assigned to …
hlapp updated
9 years ago
-
It would be nice to not have to enter a list of phenotypes if all you are looking to do is to compare a bunch of entities that have phenotype profiles. Eg. all orthologs of a gene. We should be able t…
-
Phenogrid has the functionality to compare a set of input IDs against a profile of phenotypes. However, the results are displayed in the order given and are not grouped by taxon or type. For example…
-
I would like to question the way phenotypes are currently embedded in the 'Individual' structure ( https://github.com/ga4gh/schemas/blob/master/src/main/resources/avro/metadata.avdl#L96 ).
The commen…
-
Hello,
Please forgive these naive questions as I am new to PheWAS analysis.
For the UK Biobank dataset, I have run a PHESANT (https://github.com/MRCIEU/PHESANT) analysis for a subgroup of indivi…