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Related to https://github.com/phetsims/tandem/issues/173 (PhetioGroup is not scalable).
As the number of bunnies increases, we start to experience problems with responsiveness and performance. Thi…
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Review of Medusa versus Phoenix calls in PCL patients by @sskerget identified a MYC mutation ~35% AF that was lost in the new pipeline. It is called by 2 callers (Mutect2 and Strelka2). It is called …
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Hello,
maybe it's an existing feature but then I have missed it
If one wants to find a new heterozygous site the following option exists:
```-x/X, --private/--exclude-private select/ex…
ghost updated
4 years ago
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IDPASE.jl is a excellent tool to haplotype and quantify allele-specific expression. But when I install the tools using julia v0.5,terminal show:
```
Version 0.5.2 (2017-05-06 16:34 UTC)
| Offi…
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Hi, How to obtain the gene expression level (e. g, the total reads number mapped to a gene or FPKM value) besides the allele-specific reads number in the position with SNPs?
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Hi!
1. My problem is with the VCF file where I don't know the genotypes of the SNPs. So, as a test run I tried every SNP as heterozygous. Attaching the VCF file here.
2. When I tried run for all t…
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Is this the place for bug reports about the tool?
Was working on https://bioentity.link//#/publication/10.1534/genetics.119.302435
Trying to link `rad9` in the phrase "rad9-deficient" using the …
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Hello,
I am running Hic-Pro (version 2.11.1) on a cluster and it crashed at the following step. Kindly help.
`## mergeBAM.py
## forward= Bowtie2/bwt2/CHiC_clf_Root_S8/trim_CHiC_clf_Root_S8_R1_pai…
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* scBASE version: v0.1.1
* Python version: python3.7.3
* Operating System:
ProductName: Mac OS X
ProductVersion: 10.13.4
BuildVersion: 17E199
### Description
I'm trying to run scBASE with …
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Hi
It is exciting to see such a tool explicit to do allele-specific expression for HLA allele.
I am also working on HLA allele specific expression. In my own pipeline , I use kallisto to quantify t…