-
- [ ] Improve coverage of 'viash run'
- [ ] Improve coverage of 'viash build'
* [x] Check docker build uses correct image versions
* [x] Verify output from --meta
* [x] Test should be able…
Grifs updated
2 years ago
-
Error:
```
Exception in thread "main" java.net.URISyntaxException: Illegal character in path at index 34: file:///home/ericvdkerckhove/viash tests/hello_world/config.vsh.yaml
at java.base/java.n…
-
* `meta[resources_dir]` should contain an absolute path, not a relative path
* `'''` is incorrectly escaped to `\\'\\'\\'` inside the main.nf
* argument `{ name: --foo, type: file, multiple: true }`…
-
I did some testing to see if I could make the generated bash scripts for docker work with podman.
It should be as simple as replacing all calls to `docker` with `podman`, but this was not the case.
…
-
I created a repository, [`viash_nxf_poc`](https://github.com/viash-io/viash_nxf_poc), to work out a POC for a NextFlowPlatform rewrite. I'm proposing this rewrite to fix some of my annoyances with the…
-
For the following arguments:
```yaml
- name: "--flag_true"
type: boolean_true
description: "Flag true"
- name: "--flag_false"
type: boolean_false
description: "F…
-
In the functionality config, add option to group arguments into groups.
Advantage could be to organize the help output into sections
Grifs updated
2 years ago
-
Forgetting to set the `params.output = "..."` parameter when publishing an output leads to an unhelpful error message:
command line:
```
$ ./run_nxf_pipeline.sh
N E X T F L O W ~ version 20.1…
-
Current:
```yaml
functionality:
arguments:
- type: file
direction: input
name: "--input"
- type: file
direction: output
name: "--output"
- type: string
…
-
I quite like the [DiFlow](https://github.com/data-intuitive/diflow) approach to creating Nextflow pipelines from viash modules where every event in the pipeline can be a `[id, file, params]`. If the p…