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Once it is accepted, we need to inform UKB about it. I believe @AlisaDK is responsible for that.
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Hi Joelle,
I was trying to run some gene-based tests on an unbalanced (398 cases and 401739 controls, so roughly 1:1000) binary trait (either `spa` adjusted or `firth` / `approx` flags). However, …
Ojami updated
2 years ago
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I was trying to QC the 200K UKB WES data using the preprocessing with QC pipeline and I am finding the final genotypes.h5 file to have no genotypes at all (the file size was 8Mb). I did some digging a…
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Profile/Beispiele für BGA mit PaCO2, PaO2, FiO2, pH in das Modul aufnehmen?
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I am using SNP data in regulatory regions to calculate enrichments. I am using the R package.
My Input data (hg38) looks like this:
GRanges object with 1800 ranges and 0 metadata columns:
…
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Hi,
I want to know which covariates shoud be regressed here, such as fating time or spectrometer or some else?
`bio_qc
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The genetics ETL has produced consistent outputs stored in `gs://ot_orchestration/releases/24.10_freeze1`.
We want to load this data in OpenSearch and expose the data through the API to provide a mor…
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**User story**
GPL-696 | As SSR for UKBiobank (Rich C) I would like to automate the UKB manifest upload to sequancescape because
**Who are the primary contacts for this story**
Rich C
**Accep…
rl15 updated
2 months ago
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Hi,
On the readme page of this github, there are some example commands for running gsa-mixer
For --gsa-base, the input parameters include:
--go-file go-file-baseline.csv \
--go-file-test go-fi…
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Hi Joelle - I hope you are well
I've noticed some slightly strange behaviour with regenie and strata meta-analysis.
I have performed a GWAS of a quantitative trait in the whole UKB cohort (N = 4…