-
Hi all.
### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
Python-3.8.0~b1
kernel version == 5.0.17-300
GCC-9.1.1
BioPy…
-
With the current URL, the function is returning the HTML page itself(because of SSL redirect) and needs to be updated to "https://weblogo.threeplusone.com/create.cgi".
https://github.com/biopython/…
-
e.g. https://github.com/peterjc/biopython/blob/biopython-175/Doc/Tutorial/chapter_phenotype.tex
Reduced to a smaller test case, note the inconsistent indentation of lines 4 and 6 (which LaTeX does …
-
Hello!
I just faced errors when installing novowrap within conda environment.
```
conda install -n novowrap-env -c wpwupingwp novowrap
```
New conda sometimes brake packages. It is a good idea t…
-
This is a suggestion.
metawrap-mg is totally outdated. Moreover, all of dependencies can actually work with python 3 without revising module scripts of metawrap.
Prepare a cleaner conda enviro…
-
PyPI has our (recent?) `*.tar.gz` releases, and in future we'd like to do wheels there too.
However, can we and should we simply host all the old `*.tar.gz`, `*.zip`, `*.exe` and recently `*.msi` fil…
-
Biopython/enterz.efetch issue with certain accession listed. Seems to effect all compete refseq accessions and some shotgun sequenced Refseq accessions.
List of effected accessions:
NC_008268
NC_012…
-
It would be awesome to be able to not only accept local files, but except Python data objects, for example stuff from [biopython](https://biopython.org/), i.e. a parsed GFF, or one of the `Sequence()`…
-
Hi,
I'm trying to use your software but stopped at step of setting 'full path to the blastall and formatdb executables on your computer'.
Since 'The original standalone BLAST package based on NCBI …
-
I am using biopython-1.76, python is 3.8.1, linux version, everything compiled from source.
Since the recent biopython, whenever I start the interactive python interpreter, I get
this:
[GCC 9.2…