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Dear Desislava -
I am working on a analytical procedure for 2bRAD for non-model species where I try to avoid calling SNPs altogether and calculate between-individual genetic distances from the fra…
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Hi,
I would like to plot the genetic distances between on my MSN network between MLGs but cannot find a way to do this. Is it possible?
Thank you
Simren
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Hi Gideon.
In a dataset I am currently analysing some of my short runs, and my long run seem to have some numeric stability issues:
```
748200 ---- 1.907098e+13
748300 ---- 1.907098e+13
748400…
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Bio.Phylo or Bio.Var should have a nice suite for computing genetic distances. The following distances are planned: N, Raw, Transitions, Transversions, JC69, K80, F81, K81, F84, BH87, T92, TN93, GG95,…
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As discussed in #436 and #503, it would be great to have intelligent suggestions for account names when doing imports. (I hope you don't mind that I am bringing this old issue up again?).
**Impleme…
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Hi, I am having a problem when trying to convert genotype data into a genet object in order to then compute the genetic distances. Namely, I am running:
```
library("ade4")
library("readr")
fi…
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If I input an edge list, I lose several options. In the settings, under Links, the pruning and threshold options go away, so I can’t filter. Also, the sequences tab goes away, which makes sense, but s…
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Hello,
I am running StringTie for sorted, merged bam files with both guided (-G) and unguided option. Interestingly, I can't get the process done for unstranded bam file (the size is around 260 GB;…
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Dear Linnarsson Lab,
do you think it would make sense to build a loom file export into [Scanpy](http://scanpy.readthedocs.io)? I haven't thought too much about the file format for Scanpy's [AnnData c…
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Hi,
I was wondering if you have thought about using _k_-fold cross-validation to assess the performance of optimized resistance landscapes? In each fold, the data would be partitioned into training…