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(in cleanup) Can't call method "close" on an undefined value at /path/to/CPAN/5.10.1/lib/perl5/Bio/DB/SeqFeature/Store/berkeleydb.pm line 1455.
I'd be happy to provide some run info, if needed.
ls233 updated
7 years ago
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Hi,
The all_genes pages seems to load but doesn't show all of the genes.
Thank you,
Lynn
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How could you use alignment data (and `samtools`) as well as `bedtools` in your own project?
Provide a least two examples of what said code might look like.
sr320 updated
7 years ago
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Hi Again,
I had to track down why one of my cases wasn't getting any results, here's what I found:
Topiary was outputting no epitopes, without a clear error message. I saved the temporary peptides …
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Hello,
I'm realy interested to use this program on my analysis but the same errors reported here are ocurring on my custom gtf file of putative long non-coding RNAs.
Spectre works fine with complete…
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Hi, I am annotating a paper (PMID 23935072) describing a human protein that binds to human TERRA (telomeric repeat-containg RNA), and have discovered that at the moment there are two different meaning…
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I'm having trouble cd'ing into the git repo and then running the scripts with in the repo. Here is my dockerfile
ENV BINPATH /usr/bin
WORKDIR /evolinc_docker
RUN git clone https://upendra_35@bitbuck…
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I've got this install and I'm working on some files but I get an error during read detection
Can't use an undefined value as an ARRAY reference at lncRNApipe line 2728, line 1.
Any thoughts?
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Hi,
When I used categorize_ncRNAs.pl to categorize the "_putative.class.ncRNAs.gtf" into "_class.ncRNAs.gtf" and "noClass.ncRNAs.gtf" files I got different results in different runs. And also most of…
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Mike Lin,
I have recently downloaded and successfully installed PhyloCSF on Mac OS X Mavericks, however I am having an issue running the program with FASTA alignments I have generated, which I will d…