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I am trying to run the anatomical pipeline in ciftify using docker. I already have freesurfer output, but I am unable to get the code to run.
My folder structure is as follows:
- Raw data found u…
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#### Describe the problem
The vast majority of scientists I work with use Windows computers. However, parts of MNE's source estimation stack rely on FreeSurfer, which is only available for Linux and …
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Hi,
I'm running Fmriprep on patients with huge brain lesions, and I got this error for two of my patients.
This is the code I'm running: **fmriprep-docker /home/shymaa/Desktop/my_dataset/Participan…
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### Description
Using SCT within a Jupyter notebook I'm getting this error:
```console
👉 PROCESSING: sub-MGH
--
Spinal Cord Toolbox (git-master-bb479d82ea1e2076dd50343177056a61bd17e260)
…
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Hi @pcklink @niksirbi ,
I would like to report a procedure that we use now in our lab to correct for the wrong label issue in some NHP acquisitions (like when the animal is in sphinx position, or t…
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Protocol: Do the inference with parameters included in the training (as opposed to asking FILM to extrapolate on new parameter combination). FiLMed-Unet versus Unet.
When posting new results for th…
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HI - Two issues:
1) I would like to reuse the DICOM tag labels that we put into Neurolex a few years ago, but I'm having a hard time finding the new SCR_ based ID for them. These would be used in NI…
khelm updated
7 years ago
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This might be a bug in the war build script for commit bcb8bcb2fd6f992d7303f24cf873f6d39c818b06 of domeo...
After carefully following the instructions for deploying domeo to deploy a synced version …
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### Version
main
### Feature
The docker image provided with Apache Jena code uses a multi-stage build, where the last layer (used to run it) uses Alpine Linux.
In Skosmos we are upgrading the Do…
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When I want to run the "python3 setup.py build_ext --inplace" I get following errors:
running build_ext
skipping 'normals/gpu_normals.cpp' Cython extension (up-to-date)
building 'normals.gpu_norm…