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Files imported into CellML files are sometimes missing from the exported COMBINE archives (e.g., https://models.physiomeproject.org/e/440/download_generated_omex). COMBINE archives can't be simulated …
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[`https://github.com/biosimulations/biosimulations-physiome/blob/dev/biosimulations_physiome/process_projects.py#L261`
](https://github.com/biosimulations/biosimulations-physiome/blob/b40df008f4d2a8f…
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I submitted the BiGG projects again to update the biosimulations-bigg repo, which is tracking what the BiGG simulation runs. Several hours later 8 several runs are still running, 5, simulation failed,…
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---
id: amici
version: 0.11.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_AMICI/abcc4eb9c3ae49487f02d183e1f26362268b709e/biosimulators.json
specificationsPatc…
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### Contact Details
_No response_
### Location
Other (please describe below)
### What happened?
The tests for the combine-API seem to be failing for all the Pull requests
### What made it happen…
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### Contact Details
_No response_
### Location
runBiosimulations, BioSimulations API
### What happened?
The image is unable to load the OMEX archive correctly.
See: https://run.biosimulations.de…
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https://github.com/biosimulators/Biosimulators_utils/blob/6ce19360af353444bf671f39ca9998dff3c4efff/biosimulators_utils/combine/data_model.py#L161
I have encountered the following file types in PMR …
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Would be good to add an FAQ page to the journal website to start collecting FAQs, such as "What is an OMEX file?"
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S3 path for archive contents:
```typescript
/**
* Create a path for a file of a simulation run in an S3 bucket
* @param runId Id of the simulation run
* @param fileLocation Location…
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---
id: vcell
version: 7.4.0.32
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.4.0.32/biosimulators.json
specificationsPatch:
version: 7.4.0.32
image:
url: ghcr.io…