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Right now the macro code is littered with the following type of statement, used to generate rule names:
r_name_fwd = 'cat_%s%s_to_%s%s' % (sub.monomer.name, ''.join(filter(lambda a: a != None, sub.si…
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% python mcmc_hessian/examples/robertson/run.py
creating /var/folders/-i/-igSD5NxHcy6SoB+kLQtoE+++TI/-Tmp-/berriz/python27_intermediate/compiler_3a7d3039d03c4c19b36247a436\
faa2e1
No module name…
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```
>>> from test import model
>>> from pysb.bng import generate_equations
>>> generate_equations(model)
...
File "pysb/pysb/bng.py", line 105, in _parse_species
compartment_name, monomer_name, …
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In [1]: from pysb.integrate import odesolve
/Users/johnbachman/.python26_compiled/sc_a9501a3fe328b2c4561f6ed378b7622e110.cpp: In function ‘PyObject\* compiled_func(PyObject_, PyObject_)’:
/Users/johnb…
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a parameter can be assigned with the same name and different values multiple times which makes no sense:
In [2]: from pysb import *
In [3]: Model()
Out[3]:
Model( \
monomers=[] \
compartment…