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Hi,
As mentioned in my comment in issue #820 , I'm not able to run `Tests/test_KDTree.py` or the related class in the `Bio` folder.
Following @peterjc suggestion, I've run the `python setup.py i…
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for instance, it should be easy to request a tree stored in treebase if the study is deposited there. The information is accessible from get_study_meta:
get_study_meta("pg_1940")$nexml$`^ot:dataDepos…
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Raised by @lukejharmon. For example, for `tnrs/match_names` a search might be:
```
curl -X POST http://devapi.opentreeoflife.org/v2/tnrs/match_names -H "content-type:application/json" -d '{"names":["…
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was in process of updating all our tutorials on the website, and ran into this problem
``` r
data("bird.orders")
birds
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In doing a leiningen build, attempting to download dependencies:
```
Could not transfer artifact org.nexml.model:nexml:pom:1.5-SNAPSHOT from/to nexml (http://nexml-dev.nescent.org/.m2/repository): Co…
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If you do an 'about' call to get the tree list (which oddly is called a study_list):
curl -X POST http://api.opentreeoflife.org/v2/tree_of_life/about -H "content-type:application/json" -d '{"study_l…
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Looking at the source code for tree id parsing it looks like it doesn't support tree ids that contain underscores. Since these are legal in nexml, we should support them.
I think tree ids like ot__9 …
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With a robust XMLSchema package, a few other things become easy. Integration should happen at the more universal level of the schemas themselves rather than the R level, just hopefully something we c…
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As per Dennis Roberts' request:
Here at iPlant, we’re migrating all of our Java JAR files to Sonatype’s Nexus repository, which will help us to avoid the headaches associated with managing our own re…
rvosa updated
8 years ago
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In Mesquite, when exporting a nucleotide file, and exception is thrown if there are uncertain cells in the matrix (e.g. R =A/G). Should be able to export these without complaint using the ambiguity co…