-
Due to GHA restrictions, caches can only be pulled from target branches, default branch or the same branch.
This means PRs will only be able to get a cache from develop if they are made against dev…
-
I run MSGF+ (MS-GF+ Release (v2017.01.13) (13 Jan 2017)) in OpenMS with 20 threads, while it only use CPUs no more than 450%. The sever I used here is 20 CPUs and 64Gb RAMs. This makes me confused whe…
BioWu updated
5 years ago
-
Dear all,
this may not be a strict issue for OpenMS, I hope you forgive me for asking.
We have two problems.
(1) The first is that we encounter -nan values for the Signal to Noise Ratio colum…
-
in
20
21 file_description.size = feature_map.size()
---> 22 file_description.unique_id = feature_map.getUniqueId()
23 print(file_description.unique_id)
24 f…
-
### Description of the bug
Im processing a dataset using proteomicsLFQ and it fails when it found empty list of peptides in one of the idXMLs.
```
TOPPBase.cpp(1605): Value of string option 'kee…
-
https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/pages.html
There are some tools there, which should not be there. Probably they are not categorized c…
-
in OpenMS we find code that goes like:
```
MSSpectrum new_spec = old_spec;
new_spec.clear(false);
```
quite often.
What is the best way to rewrite or speed this up?
-
I'm trying to use rainbow to extract HRMS spectra from an Agilent ESI Q-TOF. I run into a problem with the decompression of the MSProfile.bin file though where the lzf decompression fails. The data th…
-
And parse things like IONMODE, SMILES, SPECTRUMID etc for spectra.
Ionmode probably has a counterpart in spectra metadata.
SMILES would probably be a user parameter.
Spectrum ID is important too.…
-
Hi Peakonly community !
Thanks a lot for this amazing tool ! Data processing is difficult and very much user/parameter/tool dependent. With peakonly we can hope for simplified/fast and comprehensive …