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Should follow https://github.com/pineapplemachine/higher/issues/58
I have some ideas about how to maybe generalize this kind of find behavior with FSMs
You could pass a finder a consumer
A co…
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# Bug report
### Bug description:
```python
a = """
Invalid\ Escape
"""
```
When running with `PYTHONWARNINGS=error python3.13 example.py`, i get the correct error that there is an invali…
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Hello, marcus1487
This is my first methylation analysis with tombo using nanopore sequencing data.
I hope you understand, even if this is a rather vague question.
I used the 'tombo preprocess an…
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Having successfully completed the Phyluce process with my raw data, I'm now trying to rerun the program with outgroup data downloaded from SRA. The new SRR sequences are raw but paired (it's unclear w…
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All of the snapshot tests in the x64 runner fails (except for the 3 false positives, Im reporting that as a bug to akka.persistence.testkit)
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### 🚀 The feature, motivation and pitch
Taking a nod from sequence alignment algorithms in bioinformatics, given two tensors, a _template_ and _pattern_, it would be a nice feature in PyTorch to be…
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Normalization as done by `vg mod -n / -U` is known to be limited. When @jmonlong uses it on a graph created with several similar insertions at the same location, it makes some attempt to collapse mat…
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For: Kaytie Innamorati @innamoratika
**Goal:** We want to show related individuals and blocks of individuals for viral sequences. We should be equivalent or harness information on nextstrain.org. …
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`augur merge` should support input `--sequences` and `--output-sequences`.
Features:
- Sequences with same id are coalesced right-to-left, as with metadata rows.
- Duplication handling within F…
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**Question:**
From https://scottplot.net/cookbook/5.0/AxisAndTicks/ it's clear we can use `myPlot.Layout.Frameless();` to hide all axies, but how do we just remove the Y axis?
The code below wil…