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Hi all,
I'm trying to use ANTs to measure cortical thickness values in specific regions of cat cortex. I've created an average brain to use as a template and have the tissue priors for it. I also h…
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I am starting to use `sparseDecom2` to investigate the relationship between mesial temporal lobe structures and cortical thickness. Is there a way to be empirical in establishing the number of compone…
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Hello,
I found that examples of antscorticalthickness.sh usually uses 4 or 6 ROIs. Do you provide some ROI template with more than 30 ROIs that for us to download? Or if I have such a ROI template (R…
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Hi! My name is Pam. I'm working with mri of rhesus monkey, I want to do cortical thickness analysis. The scrip DistortionCorrectionAndEPIToT1wReg_FLIRTBBRAndFreeSurferBBRbased.sh calls FreeSurferNHP.…
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- Use FreeSurfer 6 beta
- Run FS by default but allow turning it off on the command line
- Make sure to use all available cores for FreeSurfer
- Use `-highres` if the input T1 resolution is
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Inspired by https://surfer.nmr.mgh.harvard.edu/fswiki/QATools, but simpler (without the skullstrippping or 3D plots). Limited to outlines of pial and white matter surfaces. Similar to the segmentation…
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Hi Kirstie,
I was wondering how to amend the code just to analyze one .csv file with cortical thickness data instead of the multiple files in the data folder ?
Thanks
Peter
docni updated
8 years ago
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250 words in total:
- Title
- Background
- Methods
- Results
- Conclusions
Also need 5 keywords
- [x] Send to co-presenters
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```
python setup.py install --prefix ../../build/
running install
running bdist_egg
running egg_info
writing top-level names to pydpiper.egg-info/top_level.txt
writing requirements to pydpiper.e…
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In order to do cortical thickness (MincLaplace) and morphology analysis on objects, we need to transform and vote objects from the atlas onto each of the subjects so they have vertex homology.
I hack…