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The GWAS Sumstats Service documentation in confluence [here](https://www.ebi.ac.uk/seqdb/confluence/pages/viewpage.action?spaceKey=GOCI&title=Summary+Statistics+Service) is outdated
All the cluster c…
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Hi all,
I have downloaded GWAS data from two traits for one region that I would like to finemap.
Because we do not have access to the individual level genotype data, I am using the 1000g reference …
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Hey,
I have a weird error occurring when running SDLP on my own annotations and summary statistics. See below for the last few output lines of code and the error message (I've attached the full out…
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Hi I'm running MTAG on 37 traits, it had took me eleven days but the log file still stop at "2019/06/01/03:58:29 PM Beginning MTAG calculations... ". seems the progress do nothing?
work.sh
python…
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Hello ! First I woudl like to thanks the developers for their open source program.
My doubt is about the LD. I've noted that the software uses the LD score to estimate sigma. Well we have at least 4 …
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Dear authors,
Here is the other and last error (I cross fingers) that I get when performing mtag with the meta_format option.
Of note, I used exactly the same sumstats to do mtag without using …
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We want to use `studyType` to:
- Filter credible sets (`StudyLocus`) and `Colocalisation` results at the API level
- Influence the logic of which `StudyLocus` are compared in Colocalisation, der…
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Hi, guys:
I got the following error. I am using Windows 11 WSL, Ubuntu Linux.
…
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Hi @jeffspence ,
I tried VILMA with the following inputs:
1. 1.7G HapMap LD matrix in this package;
2. summary statistics with over 950K variants overlapped with the LD matrix;
3. K = 60; and K…
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Hi I am trying to use the latest version. I have no issues with the old version 0.1, but the latest version is throwing this error.
I couldn't understand the meaning of the error message. I'm happ…