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A single report for Beast (with 5 runs and fieldmaps) can be 40Mb. Situation will get even worse in UH2 where there are 12 tasks across two sessions. Things to consider:
- Drop some visualisations …
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- non-visual qa, i.e. automatic flagging
- saving to cifti
- generating conversions with (when available) and without fieldmap correction
- multi-depth sampling of cortical ribbon (so multiple gift…
satra updated
6 years ago
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Most guided/tutorials/wrappers for antsRegistration seem to suggest to use explicitly brain extracted images for the moving (and fixed) image(s). antsRegistration allows to specify a binary brain mask…
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Hi all,
I'm trying to use ANTs to measure cortical thickness values in specific regions of cat cortex. I've created an average brain to use as a template and have the tissue priors for it. I also h…
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ds000030
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![image](https://cloud.githubusercontent.com/assets/238759/25882771/aae52ec4-34fa-11e7-8cb4-4cfa19fb7647.png)
- 10517
![image](https://cloud.githubusercontent.com/assets/238759/…
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For a couple of days now, I can't figure why I get a segfault with resampleImage.
Here is one of the volumes that gives me the error:
[file removed](https://github.com/ANTsX/ANTsR/files/1409026/MP…
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Hi, @NicolasRannou
I have an issue that why your volume Rendering(a brain) in lesson 06 is colorful. However, the result which I rebuild just has white and black.
Do you have some preprocessing in …
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Traditionally to perform susceptibility distortion correction (SDC) you need to have some sort of fieldmap data. However, there was some work showing that SDC can be performed without the need to acqu…
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Moving from #425, since this seems to be a legitimately different issue.
* [FMRIPREP log](https://gist.github.com/mike21499/ebe7ef6910f8948bad6130b50657d59f)
* [recon-all log](https://gist.github.…
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https://circleci.com/gh/poldracklab/fmriprep/tree/master