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* Research on Models that are compatible with the collected datasets
* List available models from IDMS
* Upload models with metadata to IDMS
* Select models based on the loaded image and available met…
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First of all, thank you for your work! I would like to know whether this model is for 2D segmentation or 3D segmentation? Does the model read data from the coronal plane only, or does it read data fro…
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Hi all,
I just run sopa on a Merscope data and ran both Cellpose and Baysor to improve the segmentation.
My SpatialData object contains all the results as you can see here :
```
SpatialData ob…
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Hello,
I'm pleasantly surprised to see how well Instanseg is working with data, even when my signal is very heterogenous. Has the model been tested for 3D segmentation, or do you suggest doing MIP…
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the tools gives 2D cuboid as a sensor fusion tool, but how about 2D bounding box, does it also provide it? I would like to contribute to this project and add semantic segmentation as well.
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### Tested versions
- tested in 3.1
### System information
macOs 13.6 - pyannote 3.1 - M2 air
### Issue description
2 variants that according to the docstring should be correct inputs i…
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For some use cases in connectomics, it is useful to only show the borders/edges of a segmentation object in the 2d overlays in order to see the cell interior in the raw data clearly, but without loos…
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I've tried the tool on a small raster:
Extent 1245766.2999999877065420,4850525.0999999521300197 : 1245883.7499999876599759,4850654.5499999513849616
Width 2349
Height 2589
Data type Byte - Eight bi…
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There seems to be severe inconsistencies between semantic annotations of consecutive frames in the v1.4.0 and v1.4.1 releases. Additionally, there are also many mislabelled elements in the scene, for …
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### What feature or change would you like to see made?
- Implement support for stack segmentation, enabling segmentation directly within stack viewports instead of converting to volume viewports
- L…