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**Submitting author:** @mdtanker (Matt Tankersley)
**Repository:** https://github.com/mdtanker/polartoolkit
**Branch with paper.md** (empty if default branch): JOSS_paper
**Version:** v0.5.1
**Editor:…
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Hi,
I used persvade to generate vcf files for each sample, how do I merge the vcf of these samples into one total vcf? What about software like bctools
Thanks
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I have two files which I want to merge but only when it's overlapping even with 1 base pair but not the adjoining element regions. Is there a way to do this in bedops --merge ?
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Dear Sir:
gridss suggest that "Joint calling should always be used for related samples", but I can NOT find any instruction for joint calling in the perSVade guide.
How should I do to run joint call…
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Hello
I am using bedops version BEDOPS/2.4.32-goolf-1.7.20 in slurm cluster. I increased the memory to 90 GB but still i get the message: segmentation dumped
I used this command to convert vcf t…
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It looks like we will begin a second attempt at a higher resolution (1/20°) PanAnt configuration. Last time we attempted this we simply sampled the old ACCESS-OM2-01 bathymetry to give the simplest po…
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Thanks for developing this great tool!
I am trying to use guidescan2-cli to find some good paired gRNA candidates for a list of genes. I thought your precomputed database could be helpful on saving s…
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Hello Wenbao,
I cannot pull the singularity (either latest or 1.5.0). It stuck at `INFO: Creating SIF file...`. It did not generate the SIF file at all.
But I can pull the singularity 1.4.4 `…
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I'm curious about the relative performances of
- `bedextract` for starched bed files
- `tabix` for gzipped bed files
- `pyBigWig` for bigBed files
for extracting records in bed-like files ove…
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**Description of the desired feature**
Suggest adding the Mannville Group dataset of 2000+ well logs, tops, and facies labels from Alberta Geological Survey. It also has metadata and a report.
Thi…