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tutorial.pdf is very nicely done. Please see the following minor suggestions for typos and wording:
parallization, parallizaton -> parallelization [in several places]
such introduction -> such…
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Hello
This summer we ran several dynamics (openMM/charmm) using your notebook on google colab.
As said in a previous mail, Many thanks for that.
Now, we ll have to run coarse-grained dynamic (Mar…
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could openmm run rigid body simulation?
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**Submitting author:** @lorenzo-rovigatti (Lorenzo Rovigatti)
**Repository:** https://github.com/lorenzo-rovigatti/oxDNA
**Branch with paper.md** (empty if default branch): joss_submission
**Version:*…
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hi，大家好，非常高兴的告诉大家，百度飞桨论文复现赛第六期已经开始了，本次**论文复现赛**共将有100+篇的经典&前沿论文供大家复现，以及新增了**飞桨特色模型挑战赛**，详细信息可以参考[AI Studio](https://aistudio.baidu.com/aistudio/competition/detail/205/0/introduction)，大家是否已经迫不及待了呢~
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**Submitting author:** @vipinagrawal25 (Vipin Agrawal)
**Repository:** https://github.com/vipinagrawal25/MeMC
**Branch with paper.md** (empty if default branch):
**Version:** v1.1
**Editor:** @fboehm…
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Hello,
I would like to ask whether [oxDNA](https://github.com/lorenzo-rovigatti/oxDNA) would be a good candidate for publication in JOSS. oxDNA is a simulation package aimed at performing simulatio…
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**Submitting author:** @ArtVoro (Arthur Voronin)
**Repository:** https://github.com/KIT-MBS/pyREX
**Version:** v1.0
**Editor:** @jgostick
**Reviewers:** @janash, @rosecers, @jarvist
**Archive:** 1…
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The newest version of DSSP (3.1.2) is not compatible with the martinize.py script used for MARTINI coarse grained molecular dynamics. The standard output of DSSP is not compatible with the rest of the…
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Dear APBS community,
I would like to know if APBS can be used with coarse-grained protein structures (for example protein models with one pseudo-atom per residue) for which I know the relevant quan…