-
- Старт/стоп кодоны
- Отсутствие стоп-кодонов внутри
- Codon usage bias (распределение частоты встречаемости кодонов должно быть смещено)
- Сайты свяывания рибосом (они должны быть)
-
---
Author Name: **Albert Vilella** (Albert Vilella)
Original Redmine Issue: 1891, https://redmine.open-bio.org/issues/1891
Original Date: 2005-11-03
Original Assignee: Bioperl Guts
---
http://evol…
-
### Description of the bug
```
ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:TMT:ID:PSMRESCORING:PERCOLATOR (g00594_Prot_37_11)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:TMT:ID:P…
-
---
Author Name: **Albert Vilella** (Albert Vilella)
Original Redmine Issue: 1891, https://redmine.open-bio.org/issues/1891
Original Date: 2005-11-03
Original Assignee: Bioperl Guts
---
http://evol…
-
We should add default codon tables of the following organisms:
1. Escherichia coli MG1655
2. Bacillus subtilis 168
3. Vibrio natriegens (whatever type strain)
4. Saccharomyces cerevisiae BY4741/…
-
I have ran into issues running the demo site on an VM as a demo for Smithsonian Inst.
I have changed the following parameters inside `/gh-ensembl-plugin/conf/ini-files/DEFAULTS.ini` to get around t…
-
```python
import random
import sys
def estimate_pi(n: int) -> float:
num_points_in_circle = 0
num_points_total = n
for i in range(n):
x = random.uniform(0,1)
y =…
-
I end up with a large and continuously increasing memory usage when using codon.
Running the exact same code with python3 I end up with less than 500 Mbyte in the process, and not increasing over tim…
-
We would like a function to make "meta-feature plots" - that, is averaged read profiles around a selection of a subset of transcript features, e.g. codons.
For example, [panel A in this figure](htt…
-
SD
последовательности для riboswitch
селеноцистеин?