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List provided by @sierra-moxon
| Ontology | JSON |
| ---- | ---- |
| GO | [JSON (subsets)](http://geneontology.org/docs/download-ontology/) |
| SO | - |
| DOID | - |
| MI | - |
| ZFA | - …
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We used this in EFO to indicate concepts which were mostly for organisational purposes (structuring the tree) and were not really intended for annotation. There are lots of examples of these in EDAM …
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In evaluating how the Common Workflow Language (https://github.com/common-workflow-language/common-workflow-language) should use EDAM, it has come up that requiring users use the canonical EDAM terms …
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As a preamble to this topic, a great example: https://bio.tools/tool/Galaxy/version/none :-1:
Here comes a list of metrics/indicators that are EXTREMELY EASY TO IMPLEMENT, while at the same time **e…
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So I've noodled the opencompose examples and I love their concise nature. What worries me is leaky abstractions and keeping in sync with all the detail in kubernetes and keeping in sync with the kuber…
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https://github.com/workflowhub-eu/about/wiki/Workflow-RO-Crate
Please leave any comments here
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These are all conda dependencies. If the server is configured to resolve a dependency via conda, I'd be really neat if these link out to e.g. https://anaconda.org/bioconda/bioconductor-goseq or maybe …
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Please make the following updates to the SBOL data format:
1) Make a subClassOf RDF format and JSON format, as well as XML.
2) Change documentation link to: https://sbolstandard.org
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error:
```php
Step 1: Preloading File sites/all/modules/custom/tripal_analysis_kegg/kegg.obo...
array_key_exists(): The first argument should be either a string or an integer OBOImporter.inc:22…
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From Jared @Jared Nedzel :
Folks, I’m working on the GTEx C2M2 submission and have some followup ontology questions from our meeting last week.
First, I wanted to confirm how we deal with compress…