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### Description of feature
Hi,
A few thoughts after working with CREsted:
1. Would you consider a `genome` style class like snapatac2 for handling the reference files (fasta, chrom sizes, gtf, …
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```
Parameters: -genome Zlat.fasta -intact Zlat.fasta.pass.list -all Zlat.fasta.out
-t 60 -q -blast /public/home/cszx_huangxh/biosoftwares/Anaconda3_8/envs/gene_ann
o/bin/
2024年 08月 26日 星期一 21:25…
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## Describe the issue
Some BND variants are missing vep annotations, while the rest have them.
## Additional information
### System
- VEP version: 113
- VEP Cache version: 113
### Full VEP…
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Hello,
I wonder if you could give me more information about the required format for the fasta headers. I have been running pasteTaxID and while I don't get any errors, the tax ids do not show up in…
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Asterisks for stops
No line spaces
Easy for copying into other software
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This isn't clear at all. Either the documentation should be updated, or the code should determine the file type by checking for the fasta header.
The error message displayed is also silly:
> empty p…
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Please See the image and kindly instruct what to do in this kind problem. Why is the output file a…
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I have uploaded a valid fasta file with the appropriate format.
Therefore, when I upload the fasta file, the VIRIDIC says "Valid fasta file"
But, VIRIDIC was not able to process my calculation.
I …
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Hello,
I am currently using your program and have a couple of questions:
When I ran the program, I was prompted to specify the species (either "human" or "mouse"), but I couldn't find an option …
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Hello, you have done a great job and thank you for your contribution to the field of protein-based genome representation.
When I was embedding the genome, I used the sample you provided (test.f…