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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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The basic idea:
I think it might be useful to allow users to upload a spreadsheet with oligos they have already designed. Cloning strategies can have multiple steps, with many oligos being used, and …
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Hello, team.
First I want to say thanks to this nice tool.
Other functions in this tool work good like _genotype_. in my single cell RNA sequencing data (+single end).
I downloaded this tool f…
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I have a student currently working on an interface that will allow browsing BrAPI genotyping data and we would like to allow filtering by marker type. With the current specs, we see no other option th…
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Hi!
First of all, thank you for the great tool.
I have single-cell RNA sequencing (cell-ranger) data for e.g 3 donors (=> 3 bam files, one per donor), as well as pooled scRNA-seq data for the sa…
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Hi @hannespetur
The genotyping accuracy of structural variants has a large impact on the subsequent analysis. Currently, I usually use `graphtyper (the latest version)` and `paragraph` to realize …
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Hi,
I'm doing population calling and made it to the genotype step. There's 25 samples, similar coverage (20X). The first handful of samples finished quickly (1hr). This is the command I used:
sm…
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I am part of a team doing targeted sequencing of PolyG loci. We have previously been using LobSTR for genotyping polyG sequences from reads prior to a consensus making step (see https://github.com/ri…
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Dear vg team,
I've got a series of questions for you regarding calling variants starting from a vg graph generated from a hal archive.
I've successfully ran cactus chromosome-wise on five differen…
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