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### Description of the bug
I apply the nfcore diffabundance pipeline on the output of the nfcore rnaseq pipeline on bulk RNA-seq data. The data contains >2 conditions with several replicates per co…
aghr updated
2 months ago
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Define functions to represent the results of multiple GSEA results as a matrix and as an associated color-coded heatmap.
See prototypes at `dvlp/enrich2qmatrix.R` (functions `gsea2qmatrix`, `cbmGSEA2q…
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### Description of the bug
Hello,
I am trying to run GSEA but I get an error when trying to process the GMT file I obtained from MSigDB.
Previously, I have executed the pipeline without the G…
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Hi,
I was trying to run the GSEA function and got confused with its parameters `exponent`, which is documented as `weight of each step`.
```
GSEA(
geneList,
exponent = 1,
minGSSize = 1…
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### Setup
I am reporting a problem with GSEApy version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_implem…
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I am following the 10X Genomics PBMC tutorial and running the wrapper function. Everything was fine until the GSEA step, it has been stuck for over 40 hours
```
2023-04-26 17:32:13,593 GSEA …
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Would you be able to provide your code for how to performed different gene expression and GSEA? Ultimately, I'm looking to make a plot like Figure 3D from your paper. Thanks
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老师您好 在运行setReadable时遇到了报错现象
> 代码如下:
GSEA_KEGG.R1 KEGG KEGG GSEA_KEGG GSEA_KEGG.R1
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**Is your feature request related to a problem? Please describe.**
gene set enrichment analysis - GO term analysis
**Describe the solution you'd like**
similar to rnfuzzy or IRIS: extend the tabl…
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The geneList contains three groups. After running the following code `GSEA_GO