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For assemblies imported into Galaxy, they currently are named `contigs.fasta`.
![image](https://user-images.githubusercontent.com/200517/166970047-24e341d0-9c9a-4c75-852d-9ebcddd084d3.png)
Howev…
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## Describe your idea for a new feature
It would make it easier to install new pipeline plugins if IRIDA could automatically detect and install all tools required for the pipeline to run.
## Desc…
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Hi,
When I try to load the models that are provided in the example directory, I'm getting the exception "invalid type code: 00". Please see https://github.com/TimmyStorms/neji and run neji.ExamplePro…
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Hi facing a issue in grouping step. Any suggestion?
Running grouping. Command line:
java -jar /data/HG135/DEL_AnalysisToolkit_NAR_20230215.jar grouping -ctrl S5 -G S1:S3:S5 -S /data/HG135/rcd135_2…
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Hello, first of all thank you so much for keeping Evolve alive. I've tinkered with it over the course of a decade now since I was young. Now I was thinking of tweaking the code to output universe prop…
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Hi,
thanks for an interesting approach.
I tried this on a normal BAM which I had aligned with BWA.
I ran alignerboost with
java -Xmx50g -jar ~/NAS01/programs/AlignerBoost/AlignerBoost.jar run fi…
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Hi,
I have OpenJDK 14.0.2.12 installed in Windows 10, however when I try to start the .exe there is the error message that it can't find Java on my System. Other Java programs seem to work, do I ne…
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Hi for the first time, I am trying to find a way to use Samtools' depth function in a Javascript Genome Browser I have been tasked with working on in my Bioinformatics MSc (first time programming). So…
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Hi.
I'm trying to upgrade a bioinformatics pipeline that uses a really old Perl version of Vardict from 2017. (This predates versioned releases of the tool, we're using the code at commit [328e00a…
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I wonder, why do you use java here? Scala seems to fit much better