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## 一言でいうと
ノイズの入れ方で学習効率が大きく変わるという話。通常の強化学習では行動を決定した後にノイズで散らすが、提案手法は行動を決定するネットワーク自体にノイズを乗せる。既存の手法ではエージェントの意思決定とは無関係にノイズが作用するので、予測不能な探索をする可能性があったとのこと。
![image](https://user-images.githubusercontent…
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It sometimes happens that the simulated network is rejected by BIC, in favor of the best tree inferred by raxml-ng. What should we do with these datasets?
A) Include them in our experiments, wastin…
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Why do trees with (unrooted) RF-distance of zero have non-zero Dendroscope distances? Does it have to do with the rooting somehow?
See screenshot from a results.csv file, used (in different setting…
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Currently, the user has to first run:
mptp --tree_file my_tree --output_file file_that_will_not_be_written_but_nevertheless_is_required_to_give --minbr_auto my_fasta_file
Then the user will get an …
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Hi,
I tried using the multi-rate method on my tree using mcmc. After the analysis, the I found that multiple nodes in the output tree have support values for speciation >0.9, yet those nodes haven'…
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We are going to simulate our networks under the birth-hybridization process of Zhang et al 2018.
In this process, we have a speciation rate l (lambda), a hybridisation rate v (nu) and the time we run…
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For all experiments, we will have (unless mentioned otherwise):
- number of MSA sites = 1000 * (number of displayed trees)
- perfect sampling: sites are sampled proportionally to the displayed tree …
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CLV of a node ->Weighted average of CLVs from different cases. See picture.
![Unbenanntes Notizbuch (22)-5](https://user-images.githubusercontent.com/1059869/116607452-4bcb3680-a932-11eb-8d29-a4d89c7…
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How is the ancestral state defined in networks?
If we have the ancestral states for all displayed trees, how do we get the ancestral states for the network? Is it just a weighted average of the per…