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I am attempting to run the experimental docker image on a Mac OSX 10.14.6 host. XQuartz is properly setup, as geomega works without any issues. When I attempt to run the sample visualization code, I g…
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Without error, I am able to call:
`docker pull {copasi image str}`
However, when calling:
`docker run {copasi image str} -i {path to omex}
-o {path to output}`
I am greeted with the follo…
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As we prepare for the migration away and sunsetting of DataSpace, I've been populating the journal articles when they become available. This has mostly focused around new records to ensure that when w…
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Hello,
I am experiencing a strange issue for the following exposure:
https://models.physiomeproject.org/exposure/e340f005288ec6bd49535cf792769dd0
When visiting the URL by browser (HTML) I se…
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reported by: @CloudyLex
http://arxiv.org/abs/1103.5354 Rollig -
Refit to numerically problematic UMIST reaction rate coefficients
M. Röllig
(Submitted on 28 Mar 2011)
Aims. Chemical databases…
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While modeling my combustion, I found there is one reaction in my kinetic library of the multiple Arrhenius type:
HCCO + OH CO2 + CH2
which uses the sum of multiple k's as the rate constant
![Sc…
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A helpful feature for systems with alternative propensity calculations (such as when stochastic constants are unavailable) might be support for externally provided propensities. For example, each reac…
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**Reported by fcasella on 23 Jan 2009 00:23 UTC**
A few general considerations about the energy balance equations in Modelica_Fluid
The energy balance equation for 1D systems includes a term
d/dx(m_…
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> Who defines the set of "common databases"? Why not taking any database registered in the Identifiers.org registry? That way, we are certain the annotations will resolve. doi:10.1093/nar/gkr1097
- N…
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Currently, database doesn't seem to pull papers based on author(s) e.g.
```bash
python query_data.py "Do you know of any papers authored by Edward Yang?"
```
```output
Response: Yes, based on …