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I went down a rabbit hole and want to pin this idea in case someone wants to take it up later: optimal fuzzy matches between the gsheet and CCV databases (or potentially any other database formats we …
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I ran the first run of the [`segment_sc_contrast-agnostic.sh`](https://github.com/ivadomed/canproco/blob/jv/segment_sc_using_contrast_agnostic_model/segment_sc_contrast-agnostic/segment_sc_contrast-ag…
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## Context
In order to generate a unique soft segmentation (related to #2), we want to average spinal cord segmentations across contrasts. However, because the images don't have the same FOV, we need…
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Cropping around the spinal cord for training and inference could help with:
- class imbalance
- training/inference time
- memory issues
There are at least two approaches for cropping:
- segment…
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### Describe the bug
[XCP-CPAC_compare.pdf](https://github.com/FCP-INDI/TheWay/files/9143184/XCP-CPAC_compare.pdf)
#### subjects with bad coregistrations
##### HRC
20415
##### NKI
A00033752,…
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## Description
This issue will be used to centralize the main discussions regarding our standardization strategies. The ultimate objective is to enable the execution of BIDS validator scripts withi…
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When I click to download [Brain: Multi-modality (sMRI, DTI, fMRI) from Schizophrenia Study](http://insight-journal.org/midas/collection/view/190), it directed me to this link: https://insight-journal.…
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# Description
AMU7T is a 3D template created in 2 contrasts acquired at 7T:
- qT1-> from 26 subjects
- t2s -> from 72 subjects
an atlas of 50 labels is associated (WM parcels from [Levi et al…
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> ⚠️ Everything pertaining to this issue should be addressed in this dedicated repository:
https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord
### Context
SCT's current most u…
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New term request MRI: subthalamic nucleus lesion (kalia_100602015135):