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**URL**: https://www.examslocal.com/ScheduleExam/Home/CompatibilityCheck
**Browser / Version**: Firefox 94.0
**Operating System**: Linux
**Tested Another Browser**: Yes Chrome
**Problem type**: …
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Hi all!
First of all, I would like to thank you for producing this useful tool.
I already went through other issues, but I did not find any other that could solve my problem.
I'm working with a…
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Hi! In the vignette, it seems like the log fold changes are displayed as perturb / NT, as after this code:
```
de_res = Run_wmvRegDE(object = seurat_obj, assay = "RNA", slot = "counts",
…
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**Describe the bug**
I'm getting the following exception when running the following code, when I googled this, it seemed to be related to a numpy update. I currently have numpy 1.23.1
```
dds.d…
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Hi @noriakis,
I tried implementing the output_overlay_image function to my code, and while it did seem to improve the resolution, it also came produced two overlapping images. Do you know what the …
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Dear developers of fastTopics,
Thank you for developing such a wonderful package. I wanted to ask what is, in your opinion, the best way to prioritize important features for a given topic after run…
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I am trying to study how different cancer types and sex affects the cell abundances in different cell types.
`design_matrix
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Hi @noriakis,
Is there any way to map genes to KEGG Pathways using KO numbers with ggkegg? I'm trying to map genes with LFCs to the "Plant hormone signal transduction" pathway. Any help would be ap…
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Hi,
I got this error when calling `dds.deseq2` on my data:
```
---------------------------------------------------------------------------
IndexError Traceback (…
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Hey, sorry incase my questions are naive
1)I am trying to use PyDESeq2 using continuous covariate (age) taking into account, sex,cmv serotype etc.
in order to get differentially expressed genes th…