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I'm just going to leave this here for now so I can remember to do this...
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I have seen several issues regarding this topic such as #182.
What is the current status? I do find `update` run a bit slow for my custom inference algorithm. (When I comment out `update`, it runs pr…
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Hi,
I ran into an error when initializing HMMs with `init_hmm`:
```
import bhmm
observations = [np.array([1, 1])]
bhmm.init_hmm(observations, 2)
```
it gives the error:
```
[...]
File "/Users/ya…
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I seem to be making good progress with the `minRMSD` based equitemporal clustering. You can see my results for the matrix of Src/Abl single/ensembler projects (cc: #23) here on the cluster:
```
/cbio…
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Just tried to run the example code given on github readme.
import markov_clustering as mc
```
import networkx as nx
import random
# number of nodes to use
numnodes = 200
# generate random…
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### Add support for DuckDB
(Related to #17012, since DuckDB supports parquet files natively)
**Description:**
DuckDB is an in-process database (similar to SQLite). Besides SQL capabilities bei…
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Hi,
I launched GRAViTy_Pipeline_I with the following options: --GenomeDescTableFile "./VEsP-1-like_references.txt" --ShelveDir "/home/arcella/GRAViTy/VEsP-1" --GenomeSeqFile "./short_dataset.gb" --N…
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Submitting Author Name: Abigail Keller
Submitting Author Github Handle: @abigailkeller
Repository: https://github.com/abigailkeller/eDNAjoint
Version submitted: 0.1
Submission type: Stats
Badge …
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Hi,
I run GRAViTy_Pipeline_I (example) with the following options:
GRAViTy_Pipeline_I \
--GenomeDescTableFile "./Test/Data/Ref/VMR_Test_Ref.txt" \
--ShelveDir "./Test/Analysis/Ref/VI" \
--Databa…
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This is the list of proposed tasks. It is to be extended. You can propose more tasks.
You can also find the previous lists here:
2022/2023: https://github.com/ClickHouse/ClickHouse/issues/42194
2…