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### Feature Description
A Bernoulli Source would be a block that outputs a 1 with probability p and a 0 with probability 1-p.
I have an example implementation in
https://github.com/michael-roe/gr…
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Just wanted to get the discussion started about Banish features, and thought a good place to start would be the kinds of models that Banish will include.
These links provide formal background to most…
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Hi, I'm having trouble understanding stage 3, can you give a brief description of how stage 3 works and what does continuous_sqrt_alpha_cumprod do once it's passed into the network?
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https://doi.org/10.1093/bioinformatics/btx480
>MOTIVATION:
An accurate characterization of transcription factor (TF)-DNA affinity landscape is crucial to a quantitative understanding of the molecu…
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KeyError Traceback (most recent call last)
in ()
25 out = markov_text_model.ma…
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Hi,
Great work, sparked my interest in probabilistic programming!
I'm mostly interested in Hidden Markov Models and in particular in a variant called **Hidden Markov Trees** (not to be confused with…
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For models with a time-step (such as Hidden Markov Models) it is often necessary to implement a transition matrix. If we had three states `A`, `B` and `C` and p_AB is the probability of transitioning …
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I would like to be able to learn the HMM parameters while putting some constraints on the values of the transition matrix of the underlying markov chain. For example, I want for state A to immediately…
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I want to calculate implied timescale using the hidden markov state model with version 2.5.12:
import pyemma.msm as msm
nstates = 4
lags = [1,2,5,10,20,25,50]
its = msm.timescales_hmsm(dtrajs, n…
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What has been done:
- Edit simulation source code to get results of one patient type
- Match simulation state probabilities with markov state probabilities
- Started coursera course
- Waiting Time…