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When I try to load a freesurfer segmentation (a standard aparc+aseg.mgz) on Ubuntu (either using the importer interface, the load volume interface or a slicerpython command) I will get this error:
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I have a custom atlas with 600+ parcels.
I am trying to import this atlas to use in ggseg3d.
I used FreeSurfer to convert the atlas object map .nii file to .mgz using the command mri_vol2surf…
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Goodmorning,
I'm having troubles while running Freesurfer mri_convert command using PyCharm.
Here's the code:
import os
import dicom2nifti
from nipype.interfaces.freesurfer import MRIConvert
f…
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I've tried running `mainfunction` provided in the example code on two different mgz files:
the first one is from my dataset, the second file is the standard sample file that comes with freesurfer sof…
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Dear Author,Greetings! I would like to apologize for any inconvenience my questions may cause. As a newcomer to the field, I am encountering some challenges while learning and utilizing the FastCSR, a…
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**IntrAnat**: @ftadel
1) BrainVisa ontology: Add storage space for FreeSurfer file: `mri/aparc.DKTatlas+aseg.mgz`
1) ImageImport: Import `mri/aparc.DKTatlas+aseg.mgz` into BrainVisa database
1) …
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# What would you like to do:
- [x] Report an issue
while preparing datalad dataset we ran into a bunch of URLs 404ing since there were deleted in the bucket. But bucket was versioned seems afte…
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### What happened?
When the data are resampled from the 1mm isotropic .mgz file to T1 space, the interpolation causes voxels on the boundary regions to be replaced by values intermediate between the …
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`mri_label2vol --seg parcellation/500.aparc.nii.gz --temp mri/rawavg.mgz --o parcellation/500.aparc.indiv.nii.gz --regheader parcellation/500.aparc.nii.gz`