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Hi Mette,
Thank you for developing this wonderful set of tools for fooptrint analysis.
I am wondering if it is possible to integrate motifs with genomic sites as input for BINDetect to do diffe…
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```
biocbuild@kunpeng1 ~/git> R CMD build --keep-empty-dirs --no-resave-data ELMER
* checking for file ‘ELMER/DESCRIPTION’ ... OK
* preparing ‘ELMER’:
* checking DESCRIPTION meta-information ... O…
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Hi, I am running the Scenic+plus pipeline with Zebra fish and I am getting `Unable to load annotation for custom` warnings when I run `run_pycistarget`
All databases created specifically for Zebra …
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Hi,
I had a very weird bug when scanning TF binding motifs.
I followed the instructions from the [notebook](https://github.com/morris-lab/CellOracle/blob/master/docs/notebooks/02_motif_scan/02…
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### Checks
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the [latest version](https://pypi.org/project/polars/) of Polars.
### Re…
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I have tried to install celloracle
`conda create -n celloracle_env python=3.8
conda activate celloracle_env`
`conda install -c bioconda pybedtools`
The installation was successful, however, when …
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• Develop your modification and motif analysis script and XML files in GitHub,
and in a new issue on GitHub
• record link to modification and motif script
https://github.com/wangna62691/PacBio_Asse…
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Hello dev team,
Thanks for the amazing tool. I would like to understand the TFinfo and Base GRN files a little bit better.
The TF info file looks like this: What are these factors_direct and fa…
momur updated
3 months ago
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First thank for sharing such a powerful pipeline for chromatin and motif analysis.
I was trying build a mm10 database based on regions defined in ATACseq following your tutorial.
However, I encounte…
WGLUN updated
10 months ago
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For the chimeric UTR data analysis, all our constructs have the same 3'UTRs, and there are few motifs present, so we should fit a model to only that data.
At the moment the analysis in
`raw_data_a…