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I have been using the DIA_SpecLib_Quant workflow for GPF-DIA data in FragPipe recently, largely without changes other than specifying expected mass shifts. Everything seems to work fine, except when i…
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Support a biclustering: HCA of MS/MS spectra as present and in addition HCA of MS1 abundances with the corresponding heatmap similar to the present one
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Similar as to the MS1 Heatmaps (or the "MS2 Heatmaps") , we could provide also this information for Bruker files.
This should be relatively easy, since there are already tools which are able to v…
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Dear DIANN,
Thanks a lot for developing this amazing software. We implemented it in our single cell workflow.
Unfortunately, we got 0 protein identification with our latest mouse single cell ex…
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I've been using RaMS for about a year and it is amazing; finally an easy depencency-light way to fast reading and tidy manipulation of MS data! My feature request is could there be a way to label dif…
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SQLite tasks:
- [x] Conversion code:
- [ ] Single spectrum
- [x] Chromatogram (given m/z range)
- [ ] Multi-spectrum RT range
- [ ] Decide whether/how/which indexing can be used
- …
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Hi,
I am currently working on running the DEIMoS commands within a Python script from the DEIMoS environment terminal and saving the relevant outputs in the working directory. This has worked well…
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The `ms1_isotopes ` parameter is currently ignored in ChromatogramExtractor::prepare_coordinates()
https://github.com/OpenMS/OpenMS/blob/develop/src/openms/source/ANALYSIS/OPENSWATH/ChromatogramExtra…
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### Basic information
* My operating system and version: Agilent MS data
* My mzmine version: 3.2.8
### What happened
Hi. I have a problem during mzmine processing for FBMN. I keep getting e…
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Feature Description:
A (set of) filter(s), ideally also applying when exporting summaries, that let you filter out any features with no matching structures, above/below certain quality metrics (Tani…