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I am trying to use MoChA wdl pipeline to call mCA mutations from a dataset that was sequenced on the Affymetrix Axiom Precision Medicine Diversity Array. I have previously used the pipeline to call mC…
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Hello Gerald, (@gmuecke )
I have been work with your great plugin in my locally hosted SonarQube instance for a few weeks and found it quite useful.
I have now asked my admins to consider installi…
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I have a maven project where there are two folders with source code and unit test cases in each folder. There are three pom.xml files in total - one in root level and one in each folder. The source co…
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Noticed in passing: the [fieldalignment](https://pkg.go.dev/golang.org/x/tools/go/analysis/passes/fieldalignment) analyzer (which as of gopls/v0.17.0 is now used in x/tools only by its tests) potentia…
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**Is your feature request related to a problem? Please describe.**
When running on very large projects, it can take time to generate the mutations in addition to running the mutations. As an example,…
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**Is your feature request related to a problem? Please describe.**
- Currently there are different ion channel modeling approaches available
- Including HH-style and Markov models
- Each appr…
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Hi @kylebarlow,
Please advise on how to analyze the output of single site saturation mutagenesis after running the program, `analyze_flex_ddG.py`. The stdout to the terminal (or redirecting to a log…
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Thank you for sharing this amazing dataset and code. It's really helpful for me to analyze the data.
I am not sure this is the right place to ask this type of question or request, but I wonder how …
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### Description of the bug
Dear @FriederikeHanssen,
I am experiencing problems running Control-FREEC on my WXS data from matched normal/tumor samples.
I have used sarek on the same samples to perfor…
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Collaborators have asked if we could implement a module for performing differential analysis.
After speaking with Dan T., we believe that we can do so in the existing application without bogging t…