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Hello! I am using LTR_retriever in conjunction with results from LTRharvest, and I have a general question about the LTR_retriever results. I have found that LTR_retriever greatly reduces the number o…
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Greetings,
I am interested in trying the LTR_retriever strategy to validate hits I obtained from an LTRharvest dataset. I downloaded the files associated with LTR_retriever and modified the "paths"…
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@mcscimenc I moved your last bug report to this new thread.
Start forwarding:
OK, the program runs for a little while and now gives this error:
ERROR: No such file or directory at /home/joshd/s…
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Hi! I'm excited to use LTR_retriever. I ran LTR_retriever using the following call:
```
LTR_retriever \
-genome Salvinia_cucullata_v1.1.fa \
-inharvest LTRHarvest.out \
-linelib LINEs.viridi…
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Hi Shujun,
I was wondering if it's expected that there are many short sequences in ~.LTRlib.fa? Of the 8424 entries, 81 are 11 bp long, and 542 are less than 100 bp long.
Also, is ~.LTRlib.fa th…
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I've been trying to run LTR_retriever on my data with the following command:
`LTR_retriever -genome c.fa -inharvest c.harvest.scn`
I'm using a freshly cloned version of LTR_retriever (as of 6/4/2017…
angwg updated
7 years ago
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I downloaded the latest master version today of LTR_retriever and am trying to run it with my plant genome sequence with `LTR_retriever -genome genome.fasta -inharvest genome.ltrharvest.scn -infinder…